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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16131 and 16132 are separated by 870 nucleotides
16132 and 16133 are separated by 215 nucleotides
16133 and 16134 are separated by 309 nucleotides
16134 and 16135 are separated by 2303 nucleotides
mRNA_7763: 16131 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 1,010,750 to 1,013,184
16131
mRNA_7764: 16132 - Hypothetical Protein, at 1,014,055 to 1,015,066
16132
mRNA_7765: 16133 - KOG0118 FOG RRM domain, at 1,015,282 to 1,015,674
16133
mRNA_7766: 16134 - KOG0118 FOG RRM domain, at 1,015,984 to 1,016,398
16134
mRNA_7767: 16135 - ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896, at 1,018,702 to 1,022,173
16135
Group
Condition
mRNA
_7763
mRNA
_7764
mRNA
_7765
mRNA
_7766
mRNA
_7767
16131
16132
16133
16134
16135
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.2
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.7
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.7
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
N.D.
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
N.D.
N.D.
+0.2
growth on ypd
YPD
+0.2
-0.3
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.5
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.5
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
N.D.
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
+0.6
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+1.3
N.D.
N.D.
-0.3
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