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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16133 and 16134 are separated by 309 nucleotides
16134 and 16135 are separated by 2303 nucleotides
16135 and 16136 are separated by 189 nucleotides
16136 and 16137 are separated by 113 nucleotides
mRNA_7765: 16133 - KOG0118 FOG RRM domain, at 1,015,282 to 1,015,674
16133
mRNA_7766: 16134 - KOG0118 FOG RRM domain, at 1,015,984 to 1,016,398
16134
mRNA_7767: 16135 - ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896, at 1,018,702 to 1,022,173
16135
mRNA_7768: 16136 - SUPERFAMILY--SSF52058, at 1,022,363 to 1,024,489
16136
mRNA_7769: 16137 - KOG2504 Monocarboxylate transporter, at 1,024,603 to 1,026,390
16137
Group
Condition
mRNA
_7765
mRNA
_7766
mRNA
_7767
mRNA
_7768
mRNA
_7769
16133
16134
16135
16136
16137
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.5
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
-0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.0
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.1
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.0
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
+0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.3
+0.6
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