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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16139 and 16140 are separated by 230 nucleotides
16140 and 16141 are separated by 413 nucleotides
16141 and 16142 are separated by 194 nucleotides
16142 and 16143 are separated by 863 nucleotides
mRNA_7771: 16139 - HMMPfam-SPFH domain / Band 7 family-PF01145,PRINTS-Stomatin signature-PR00721,SMART-prohibitin homologues-SM00244,SUPERFAMILY--SSF117892, at 1,028,711 to 1,030,372
16139
mRNA_7772: 16140 - Hypothetical Protein, at 1,030,603 to 1,031,384
16140
mRNA_7773: 16141 - K12857 SNRNP40, PRP8BP Prp8 binding protein, at 1,031,798 to 1,033,403
16141
mRNA_7774: 16142 - KOG1546 Metacaspase involved in regulation of apoptosis, at 1,033,598 to 1,035,909
16142
mRNA_7775: 16143 - K01673 cynT, can carbonic anhydrase, at 1,036,773 to 1,037,366
16143
Group
Condition
mRNA
_7771
mRNA
_7772
mRNA
_7773
mRNA
_7774
mRNA
_7775
16139
16140
16141
16142
16143
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-1.0
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.5
-0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
-1.2
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.7
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.2
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.3
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.2
+0.3
-0.1
auxotrophy
Dropout Complete
+0.3
N.D.
-0.2
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.7
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.3
+0.2
growth on ypd
YPD
+0.3
N.D.
+0.5
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+1.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.1
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.1
+0.5
+0.2
auxotrophy
YNB Glucose
+0.3
N.D.
+0.3
+0.4
+0.3
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