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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16144 and 16145 are separated by 392 nucleotides
16145 and 16146 are separated by 31 nucleotides
16146 and 16147 are separated by 747 nucleotides
16147 and 16148 are separated by 687 nucleotides
mRNA_7776: 16144 - K01899 LSC1 succinyl-CoA synthetase alpha subunit, at 1,037,588 to 1,039,295
16144
mRNA_7777: 16145 - KOG0769 Predicted mitochondrial carrier protein, at 1,039,688 to 1,041,157
16145
mRNA_7778: 16146 - Hypothetical Protein, at 1,041,189 to 1,043,169
16146
mRNA_7779: 16147 - K06655 PHO85 negative regulator of the PHO system, at 1,043,917 to 1,045,287
16147
mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1,045,975 to 1,050,892
16148
Group
Condition
mRNA
_7776
mRNA
_7777
mRNA
_7778
mRNA
_7779
mRNA
_7780
16144
16145
16146
16147
16148
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
N.D.
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
N.D.
+0.2
growth on ypd
YPD
N.D.
N.D.
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.4
N.D.
+0.3
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