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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16147 and 16148 are separated by 687 nucleotides
16148 and 16149 are separated by 36 nucleotides
16149 and 16150 are separated by 311 nucleotides
16150 and 16151 are separated by 853 nucleotides
mRNA_7779: 16147 - K06655 PHO85 negative regulator of the PHO system, at 1,043,917 to 1,045,287
16147
mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1,045,975 to 1,050,892
16148
mRNA_7781: 16149 - K18664 SLH1 antiviral helicase SLH1, at 1,050,929 to 1,056,955
16149
mRNA_7782: 16150 - Hypothetical Protein, at 1,057,267 to 1,057,848
16150
mRNA_7783: 16151 - HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506, at 1,058,702 to 1,060,371
16151
Group
Condition
mRNA
_7779
mRNA
_7780
mRNA
_7781
mRNA
_7782
mRNA
_7783
16147
16148
16149
16150
16151
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.1
-1.9
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.5
-0.6
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.5
-0.0
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.0
-0.9
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.7
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.9
+0.1
+0.0
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
-0.2
-0.0
auxotrophy
Dropout Complete
N.D.
+0.2
-0.1
-0.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.4
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.7
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.2
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.2
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.4
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
-0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.3
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.2
-0.0
+0.1
growth on ypd
YPD
N.D.
+0.0
-0.1
+0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.0
+0.7
+0.0
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