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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16150 and 16151 are separated by 853 nucleotides
16151 and 16152 are separated by 135 nucleotides
16152 and 16153 are separated by 426 nucleotides
16153 and 16154 are separated by 565 nucleotides
mRNA_7782: 16150 - Hypothetical Protein, at 1,057,267 to 1,057,848
16150
mRNA_7783: 16151 - HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506, at 1,058,702 to 1,060,371
16151
mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,060,507 to 1,063,006
16152
mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,063,433 to 1,065,460
16153
mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1,066,026 to 1,067,472
16154
Group
Condition
mRNA
_7782
mRNA
_7783
mRNA
_7784
mRNA
_7785
mRNA
_7786
16150
16151
16152
16153
16154
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
+0.2
-0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.4
+0.1
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
-0.1
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.9
+0.3
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.0
+0.1
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
-0.1
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.1
-0.0
-0.1
auxotrophy
Dropout Complete
-0.6
+0.1
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.0
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.2
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.0
+0.1
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
+0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
+0.3
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
+0.3
+0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
+0.0
+0.4
+0.3
growth on oleic acid
YNB Glucose
+0.7
+0.0
+0.3
+0.1
+0.1
growth on ypd
YPD
+0.4
+0.1
+0.3
+0.6
-0.0
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