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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16152 and 16153 are separated by 426 nucleotides
16153 and 16154 are separated by 565 nucleotides
16154 and 16155 are separated by 450 nucleotides
16155 and 16156 are separated by 390 nucleotides
mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,060,507 to 1,063,006
16152
mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,063,433 to 1,065,460
16153
mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1,066,026 to 1,067,472
16154
mRNA_7787: 16155 - Hypothetical Protein, at 1,067,923 to 1,069,410
16155
mRNA_7788: 16156 - Hypothetical Protein, at 1,069,801 to 1,071,312
16156
Group
Condition
mRNA
_7784
mRNA
_7785
mRNA
_7786
mRNA
_7787
mRNA
_7788
16152
16153
16154
16155
16156
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
+0.1
-0.8
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.4
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
-0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.5
+0.3
-0.2
auxotrophy
Dropout Complete
-0.1
+0.1
+0.3
-0.6
-0.2
auxotrophy
YNB Glucose
+0.1
+0.2
+0.1
-0.4
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.0
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
+0.3
-0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
+0.5
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.3
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.2
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.2
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
+0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
+0.1
+0.7
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
+0.3
+0.6
-0.4
growth on ypd
YPD
+0.3
+0.6
-0.0
+0.5
-0.3
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