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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16154 and 16155 are separated by 450 nucleotides
16155 and 16156 are separated by 390 nucleotides
16156 and 16157 are separated by 514 nucleotides
16157 and 16158 are separated by 485 nucleotides
mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1,066,026 to 1,067,472
16154
mRNA_7787: 16155 - Hypothetical Protein, at 1,067,923 to 1,069,410
16155
mRNA_7788: 16156 - Hypothetical Protein, at 1,069,801 to 1,071,312
16156
mRNA_7789: 16157 - Hypothetical Protein, at 1,071,827 to 1,073,399
16157
mRNA_7790: 16158 - Hypothetical Protein, at 1,073,885 to 1,074,580
16158
Group
Condition
mRNA
_7786
mRNA
_7787
mRNA
_7788
mRNA
_7789
mRNA
_7790
16154
16155
16156
16157
16158
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
-0.3
+0.0
-1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.3
-0.2
+0.2
-1.7
growth on ypd
YPD
-0.0
+0.5
-0.3
-0.2
-1.5
auxotrophy
Dropout Complete
+0.3
-0.6
-0.2
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.4
-0.5
+0.0
-0.2
auxotrophy
YNB Glucose
+0.1
-0.4
-0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
-0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
-0.4
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.7
-0.2
+0.4
-1.0
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.1
+0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-0.1
+0.2
+0.8
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
-0.2
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
+0.0
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.3
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.3
+0.0
+0.4
+1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
-0.3
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.1
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.6
-0.4
-0.0
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+0.0
-0.2
+1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.1
+1.1
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