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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16158 and 16159 are separated by 537 nucleotides
16159 and 16160 are separated by 236 nucleotides
16160 and 16161 are separated by 1256 nucleotides
16161 and 16162 are separated by 249 nucleotides
mRNA_7790: 16158 - Hypothetical Protein, at 1,073,885 to 1,074,580
16158
mRNA_7791: 16159 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 1,075,118 to 1,077,656
16159
mRNA_7792: 16160 - Hypothetical Protein, at 1,077,893 to 1,078,494
16160
mRNA_7793: 16161 - KOG2533 Permease of the major facilitator superfamily, at 1,079,751 to 1,082,050
16161
mRNA_7794: 16162 - BLAST rRNA (adenine-N6,N6)-dimethyltransferase [Rhizoctonia..., at 1,082,300 to 1,083,358
16162
Group
Condition
mRNA
_7790
mRNA
_7791
mRNA
_7792
mRNA
_7793
mRNA
_7794
16158
16159
16160
16161
16162
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.1
-1.7
+0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.1
-0.7
-3.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.7
-0.8
+1.9
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.2
-0.6
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.2
-1.1
-0.3
+0.2
growth on ypd
YPD
-1.5
+0.2
+0.7
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
+0.5
-0.0
-0.1
auxotrophy
YNB Glucose
-0.4
-0.3
+0.8
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.2
-0.6
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.2
+0.6
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.4
+0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.6
+0.0
-0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+1.4
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
-0.3
-0.1
+0.1
auxotrophy
Dropout Complete
-0.4
-0.5
+2.0
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-0.0
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
-0.5
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+1.1
-0.4
+0.5
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.7
+0.5
+0.6
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.4
+2.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+0.0
+3.5
-0.2
-0.2
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