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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16159 and 16160 are separated by 236 nucleotides
16160 and 16161 are separated by 1256 nucleotides
16161 and 16162 are separated by 249 nucleotides
16162 and 16163 are separated by 837 nucleotides
mRNA_7791: 16159 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 1,075,118 to 1,077,656
16159
mRNA_7792: 16160 - Hypothetical Protein, at 1,077,893 to 1,078,494
16160
mRNA_7793: 16161 - KOG2533 Permease of the major facilitator superfamily, at 1,079,751 to 1,082,050
16161
mRNA_7794: 16162 - BLAST rRNA (adenine-N6,N6)-dimethyltransferase [Rhizoctonia..., at 1,082,300 to 1,083,358
16162
mRNA_7795: 16163 - ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006, at 1,084,196 to 1,085,821
16163
Group
Condition
mRNA
_7791
mRNA
_7792
mRNA
_7793
mRNA
_7794
mRNA
_7795
16159
16160
16161
16162
16163
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-3.1
-0.1
+0.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.6
-0.2
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.1
-0.3
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.7
+0.5
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
+0.2
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
-0.1
-0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
-0.1
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
+1.9
-0.2
-0.3
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.5
-0.1
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose
-0.3
+0.8
+0.2
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.5
+0.3
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.5
+0.6
-0.1
+0.1
-0.2
auxotrophy
Dropout Complete
-0.5
+2.0
-0.1
-0.2
-0.1
growth on ypd
YPD
+0.2
+0.7
+0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+1.4
-0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+2.0
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+3.5
-0.2
-0.2
-0.4
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