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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16166 and 16167 overlap by 2 nucleotides
16167 and 16168 are separated by 457 nucleotides
16168 and 16169 are separated by 826 nucleotides
16169 and 16170 are separated by 506 nucleotides
mRNA_7798: 16166 - Hypothetical Protein, at 1,090,877 to 1,091,572
16166
mRNA_7799: 16167 - KOG1738 Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like, at 1,091,571 to 1,096,193
16167
mRNA_7800: 16168 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,096,651 to 1,099,129
16168
mRNA_7801: 16169 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,099,956 to 1,102,203
16169
mRNA_7802: 16170 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,102,710 to 1,107,641
16170
Group
Condition
mRNA
_7798
mRNA
_7799
mRNA
_7800
mRNA
_7801
mRNA
_7802
16166
16167
16168
16169
16170
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
-0.1
+0.3
-2.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.3
+0.3
-1.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.2
+0.0
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.4
-0.1
+0.3
-2.0
auxotrophy
YNB Glucose
+0.4
+0.3
-0.1
+0.1
-1.7
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.4
-0.0
+0.2
-1.8
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
-0.0
+0.2
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.3
+0.4
-0.6
auxotrophy
Dropout Complete
+0.5
+0.5
-0.2
+0.2
-1.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.1
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.1
+0.6
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.0
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.1
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.1
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.3
-0.1
+0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
+0.1
+0.4
-0.6
growth on ypd
YPD
+0.2
+0.1
-0.0
-0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.4
+0.1
+0.6
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