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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16168 and 16169 are separated by 826 nucleotides
16169 and 16170 are separated by 506 nucleotides
16170 and 16171 are separated by 1159 nucleotides
16171 and 16172 are separated by 281 nucleotides
mRNA_7800: 16168 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,096,651 to 1,099,129
16168
mRNA_7801: 16169 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,099,956 to 1,102,203
16169
mRNA_7802: 16170 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,102,710 to 1,107,641
16170
mRNA_7803: 16171 - K11855 USP36_42 ubiquitin carboxyl-terminal hydrolase 36/42, at 1,108,801 to 1,111,238
16171
mRNA_7804: 16172 - KOG1204 Predicted dehydrogenase, at 1,111,520 to 1,112,833
16172
Group
Condition
mRNA
_7800
mRNA
_7801
mRNA
_7802
mRNA
_7803
mRNA
_7804
16168
16169
16170
16171
16172
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-2.3
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-1.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-1.8
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-2.0
-0.3
+0.1
auxotrophy
YNB Glucose
-0.1
+0.1
-1.7
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-1.6
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
-0.6
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
-1.5
+0.1
+0.4
auxotrophy
Dropout Complete
-0.2
+0.2
-1.4
+0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.6
-0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
+0.1
-0.3
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.4
-0.8
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
+0.3
-0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.2
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
-1.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
+0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.3
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.3
-0.2
+0.2
growth on ypd
YPD
-0.0
-0.1
+0.4
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.6
-0.2
+0.3
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