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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16169 and 16170 are separated by 506 nucleotides
16170 and 16171 are separated by 1159 nucleotides
16171 and 16172 are separated by 281 nucleotides
16172 and 16173 are separated by 203 nucleotides
mRNA_7801: 16169 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,099,956 to 1,102,203
16169
mRNA_7802: 16170 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,102,710 to 1,107,641
16170
mRNA_7803: 16171 - K11855 USP36_42 ubiquitin carboxyl-terminal hydrolase 36/42, at 1,108,801 to 1,111,238
16171
mRNA_7804: 16172 - KOG1204 Predicted dehydrogenase, at 1,111,520 to 1,112,833
16172
mRNA_7805: 16173 - K12389 BTS, CLN3 battenin, at 1,113,037 to 1,115,028
16173
Group
Condition
mRNA
_7801
mRNA
_7802
mRNA
_7803
mRNA
_7804
mRNA
_7805
16169
16170
16171
16172
16173
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-1.4
-0.5
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-2.3
-0.4
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-1.8
-0.2
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-2.0
-0.3
+0.1
+0.4
auxotrophy
YNB Glucose
+0.1
-1.7
+0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-1.6
+0.3
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.6
-0.1
-0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.6
-0.6
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-1.5
+0.1
+0.4
+0.3
growth on oleic acid
YNB Glucose
+0.4
-0.8
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
+0.2
-1.4
+0.6
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.6
-1.0
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
-0.3
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
-0.2
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-0.4
+0.1
+0.2
growth on ypd
YPD
-0.1
+0.4
-0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
-0.5
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
-0.2
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.6
-0.2
+0.3
-0.1
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