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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16172 and 16173 are separated by 203 nucleotides
16173 and 16174 are separated by 354 nucleotides
16174 and 16175 are separated by 452 nucleotides
16175 and 16176 are separated by 212 nucleotides
mRNA_7804: 16172 - KOG1204 Predicted dehydrogenase, at 1,111,520 to 1,112,833
16172
mRNA_7805: 16173 - K12389 BTS, CLN3 battenin, at 1,113,037 to 1,115,028
16173
mRNA_7806: 16174 - Hypothetical Protein, at 1,115,383 to 1,115,856
16174
mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1,116,309 to 1,117,210
16175
mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1,117,423 to 1,121,551
16176
Group
Condition
mRNA
_7804
mRNA
_7805
mRNA
_7806
mRNA
_7807
mRNA
_7808
16172
16173
16174
16175
16176
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.5
-0.1
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.2
-0.5
-0.1
-1.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.0
+0.3
-1.3
auxotrophy
YNB Glucose
+0.1
+0.2
-0.2
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
-0.2
+0.1
-0.7
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.0
+0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
+0.1
+0.3
-0.8
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.2
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
-0.5
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.0
+0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-0.2
+0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.2
-0.6
+0.7
auxotrophy
Dropout Complete
+0.1
+0.3
+0.1
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.2
+0.3
+0.3
growth on ypd
YPD
+0.3
-0.1
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.5
-1.4
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.4
+0.3
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
+0.1
+0.3
+0.5
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