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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16175 and 16176 are separated by 212 nucleotides
16176 and 16177 are separated by 382 nucleotides
16177 and 16178 are separated by 938 nucleotides
16178 and 16179 are separated by 421 nucleotides
mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1,116,309 to 1,117,210
16175
mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1,117,423 to 1,121,551
16176
mRNA_7809: 16177 - Hypothetical Protein, at 1,121,934 to 1,122,810
16177
mRNA_7810: 16178 - K02358 tuf, TUFM elongation factor Tu, at 1,123,749 to 1,125,478
16178
mRNA_7811: 16179 - Hypothetical Protein, at 1,125,900 to 1,126,824
16179
Group
Condition
mRNA
_7807
mRNA
_7808
mRNA
_7809
mRNA
_7810
mRNA
_7811
16175
16176
16177
16178
16179
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.6
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-1.1
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-1.3
+0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.8
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+1.1
-0.0
N.D.
-0.6
auxotrophy
YNB Glucose
-0.2
-0.7
+0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.5
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.7
+0.1
N.D.
+0.0
auxotrophy
Dropout Complete
+0.1
-0.5
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
+0.2
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.5
+0.0
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.7
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
-0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.2
N.D.
+0.0
growth on ypd
YPD
-0.1
+0.2
-0.1
N.D.
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
+0.3
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
+0.0
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.7
-0.0
N.D.
+0.5
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