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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16180 and 16181 are separated by 401 nucleotides
16181 and 16182 are separated by 867 nucleotides
16182 and 16183 are separated by 430 nucleotides
16183 and 16184 are separated by 321 nucleotides
mRNA_7812: 16180 - K12876 RBM8A, Y14 RNA-binding protein 8A, at 1,127,228 to 1,128,549
16180
mRNA_7813: 16181 - K01476 E3.5.3.1, rocF, arg arginase, at 1,128,951 to 1,130,543
16181
mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1,131,411 to 1,132,941
16182
mRNA_7815: 16183 - Hypothetical Protein, at 1,133,372 to 1,134,436
16183
mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633
16184
Group
Condition
mRNA
_7812
mRNA
_7813
mRNA
_7814
mRNA
_7815
mRNA
_7816
16180
16181
16182
16183
16184
auxotrophy
Dropout Complete
N.D.
N.D.
-0.6
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.2
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
-0.3
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.4
+0.0
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