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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16181 and 16182 are separated by 867 nucleotides
16182 and 16183 are separated by 430 nucleotides
16183 and 16184 are separated by 321 nucleotides
16184 and 16185 are separated by 5 nucleotides
mRNA_7813: 16181 - K01476 E3.5.3.1, rocF, arg arginase, at 1,128,951 to 1,130,543
16181
mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1,131,411 to 1,132,941
16182
mRNA_7815: 16183 - Hypothetical Protein, at 1,133,372 to 1,134,436
16183
mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633
16184
mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,135,639 to 1,138,436
16185
Group
Condition
mRNA
_7813
mRNA
_7814
mRNA
_7815
mRNA
_7816
mRNA
_7817
16181
16182
16183
16184
16185
auxotrophy
Dropout Complete
N.D.
-0.6
-0.2
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.2
-0.2
-0.3
growth on ypd
YPD
N.D.
-0.2
-0.5
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose
N.D.
-0.1
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.2
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.3
+0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.0
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
+0.2
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
+0.0
+0.2
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