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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16182 and 16183 are separated by 430 nucleotides
16183 and 16184 are separated by 321 nucleotides
16184 and 16185 are separated by 5 nucleotides
16185 and 16186 are separated by 257 nucleotides
mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1,131,411 to 1,132,941
16182
mRNA_7815: 16183 - Hypothetical Protein, at 1,133,372 to 1,134,436
16183
mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633
16184
mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,135,639 to 1,138,436
16185
mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1,138,694 to 1,141,964
16186
Group
Condition
mRNA
_7814
mRNA
_7815
mRNA
_7816
mRNA
_7817
mRNA
_7818
16182
16183
16184
16185
16186
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
-0.0
-0.0
-1.8
auxotrophy
Dropout Complete
-0.6
-0.2
-0.2
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.2
-0.3
-0.2
auxotrophy
YNB Glucose
-0.1
+0.0
-0.1
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.1
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.4
+0.0
+0.2
-1.2
growth on ypd
YPD
-0.2
-0.5
+0.1
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
-0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
+0.1
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.0
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
-0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.2
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.1
-0.2
+0.6
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
+0.1
-0.1
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.5
+0.0
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.4
-0.2
+1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
-0.0
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.1
-0.0
+1.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.1
-0.2
+1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.2
-0.0
+1.8
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