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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16184 and 16185 are separated by 5 nucleotides
16185 and 16186 are separated by 257 nucleotides
16186 and 16187 are separated by 247 nucleotides
16187 and 16188 are separated by 250 nucleotides
mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633
16184
mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,135,639 to 1,138,436
16185
mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1,138,694 to 1,141,964
16186
mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1,142,212 to 1,144,699
16187
mRNA_7820: 16188 - Hypothetical Protein, at 1,144,950 to 1,145,793
16188
Group
Condition
mRNA
_7816
mRNA
_7817
mRNA
_7818
mRNA
_7819
mRNA
_7820
16184
16185
16186
16187
16188
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.0
-1.8
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
-1.2
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
+0.1
-0.2
auxotrophy
Dropout Complete
-0.2
-0.4
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.4
-0.3
+0.1
auxotrophy
YNB Glucose
-0.1
-0.3
-0.2
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.3
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.0
-0.3
+0.4
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.6
-0.1
+0.2
growth on ypd
YPD
+0.1
+0.0
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.0
+1.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+1.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+1.4
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
+1.7
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.3
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
+1.6
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
+1.2
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
+1.8
+0.1
+0.4
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