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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16186 and 16187 are separated by 247 nucleotides
16187 and 16188 are separated by 250 nucleotides
16188 and 16189 are separated by 389 nucleotides
16189 and 16190 are separated by 496 nucleotides
mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1,138,694 to 1,141,964
16186
mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1,142,212 to 1,144,699
16187
mRNA_7820: 16188 - Hypothetical Protein, at 1,144,950 to 1,145,793
16188
mRNA_7821: 16189 - Hypothetical Protein, at 1,146,183 to 1,147,264
16189
mRNA_7822: 16190 - Hypothetical Protein, at 1,147,761 to 1,148,329
16190
Group
Condition
mRNA
_7818
mRNA
_7819
mRNA
_7820
mRNA
_7821
mRNA
_7822
16186
16187
16188
16189
16190
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.1
+0.1
-3.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-0.0
-0.4
-0.2
+1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.2
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.3
+0.1
+0.1
-0.8
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.2
+0.0
+0.1
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
+0.2
+0.2
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
+0.3
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.7
-0.2
+0.0
-0.1
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
-0.4
+0.3
-0.2
-0.7
auxotrophy
YNB Glucose
-0.2
-0.1
+0.6
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.3
+0.4
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
+0.1
+0.0
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.6
-0.5
+0.2
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
-0.1
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.6
-0.1
+0.2
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+1.0
-0.3
+0.3
+0.3
-0.2
growth on ypd
YPD
+0.3
-0.1
+0.2
+0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.8
+0.1
+0.4
-0.2
+0.0
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