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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16189 and 16190 are separated by 496 nucleotides
16190 and 16191 are separated by 1784 nucleotides
16191 and 16192 are separated by 484 nucleotides
16192 and 16193 are separated by 148 nucleotides
mRNA_7821: 16189 - Hypothetical Protein, at 1,146,183 to 1,147,264
16189
mRNA_7822: 16190 - Hypothetical Protein, at 1,147,761 to 1,148,329
16190
mRNA_7823: 16191 - K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3, at 1,150,114 to 1,151,854
16191
mRNA_7824: 16192 - K17981 MTFP1, MTP18 mitochondrial fission process protein 1, at 1,152,339 to 1,153,268
16192
mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1,153,417 to 1,154,602
16193
Group
Condition
mRNA
_7821
mRNA
_7822
mRNA
_7823
mRNA
_7824
mRNA
_7825
16189
16190
16191
16192
16193
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-3.0
-1.0
-0.2
-0.4
growth on ypd
YPD
+0.2
+0.6
-2.7
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.5
-0.7
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.8
+0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.2
+1.0
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.7
+0.5
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
-0.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
+1.2
-0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
+0.8
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-1.0
+1.8
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.7
+1.4
+0.6
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
+1.3
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
-0.2
+1.5
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.6
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+1.7
-0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+1.0
+0.2
+0.4
+0.1
auxotrophy
YNB Glucose
-0.1
+0.2
+1.7
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
+1.7
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.8
+1.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.5
+1.8
-0.3
+0.1
growth on oleic acid
YNB Glucose
+0.4
-0.1
+1.8
+0.5
-0.1
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