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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16191 and 16192 are separated by 484 nucleotides
16192 and 16193 are separated by 148 nucleotides
16193 and 16194 are separated by 261 nucleotides
16194 and 16195 are separated by 664 nucleotides
mRNA_7823: 16191 - K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3, at 1,150,114 to 1,151,854
16191
mRNA_7824: 16192 - K17981 MTFP1, MTP18 mitochondrial fission process protein 1, at 1,152,339 to 1,153,268
16192
mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1,153,417 to 1,154,602
16193
mRNA_7826: 16194 - KOG2533 Permease of the major facilitator superfamily, at 1,154,864 to 1,157,345
16194
mRNA_7827: 16195 - KOG4680 Uncharacterized conserved protein, contains ML domain, at 1,158,010 to 1,158,995
16195
Group
Condition
mRNA
_7823
mRNA
_7824
mRNA
_7825
mRNA
_7826
mRNA
_7827
16191
16192
16193
16194
16195
growth on ypd
YPD
-2.7
-0.1
+0.3
-0.4
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.2
-0.4
-0.6
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
-0.2
-0.1
-0.2
-2.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.0
-0.2
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
+0.1
-0.3
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.1
+0.4
-0.1
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.2
-0.5
-0.4
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
-0.0
-0.4
-0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
-0.2
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.7
-0.0
-0.4
-0.3
-0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.0
-0.0
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.0
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose
+1.7
-0.3
+0.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.8
-0.3
+0.1
-0.6
+0.2
auxotrophy
Dropout Complete
+1.5
-0.3
-0.0
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.3
-0.1
-0.0
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+1.7
+0.0
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
+0.6
-0.3
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+1.8
-0.2
-0.2
-0.0
+0.1
growth on oleic acid
YNB Glucose
+1.8
+0.5
-0.1
+0.1
-0.3
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