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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16198 and 16199 are separated by 372 nucleotides
16199 and 16200 are separated by 151 nucleotides
16200 and 16201 are separated by 277 nucleotides
16201 and 16202 are separated by 472 nucleotides
mRNA_7830: 16198 - Hypothetical Protein, at 1,164,524 to 1,165,220
16198
mRNA_7831: 16199 - Hypothetical Protein, at 1,165,593 to 1,166,209
16199
mRNA_7832: 16200 - K14843 PES1, NOP7 pescadillo, at 1,166,361 to 1,168,538
16200
mRNA_7833: 16201 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,168,816 to 1,171,622
16201
mRNA_7834: 16202 - HMMPfam-Sulfate transporter family-PF00916,HMMPfam-STAS domain-PF01740,HMMPfam-Sulfate transporter N-terminal domain with GLY motif-PF13792,ProSiteProfiles-STAS domain profile.-PS50801,SUPERFAMILY--SSF52091, at 1,172,095 to 1,175,017
16202
Group
Condition
mRNA
_7830
mRNA
_7831
mRNA
_7832
mRNA
_7833
mRNA
_7834
16198
16199
16200
16201
16202
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
N.D.
-2.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.8
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
-0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
-0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
N.D.
-0.0
-0.1
growth on ypd
YPD
+0.3
-0.1
N.D.
+0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
N.D.
+1.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose
-0.2
+0.1
N.D.
+0.8
+0.1
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
+0.8
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
N.D.
+1.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.6
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
N.D.
+2.2
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.5
N.D.
+0.8
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
+1.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.5
N.D.
+0.6
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
N.D.
+2.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
N.D.
+2.4
+0.0
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