Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16200 and 16201 are separated by 277 nucleotides16201 and 16202 are separated by 472 nucleotides16202 and 16203 are separated by 427 nucleotides16203 and 16204 are separated by 220 nucleotides mRNA_7832: 16200 - K14843 PES1, NOP7 pescadillo, at 1,166,361 to 1,168,538 16200 mRNA_7833: 16201 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,168,816 to 1,171,622 16201 mRNA_7834: 16202 - HMMPfam-Sulfate transporter family-PF00916,HMMPfam-STAS domain-PF01740,HMMPfam-Sulfate transporter N-terminal domain with GLY motif-PF13792,ProSiteProfiles-STAS domain profile.-PS50801,SUPERFAMILY--SSF52091, at 1,172,095 to 1,175,017 16202 mRNA_7835: 16203 - K01823 idi, IDI isopentenyl-diphosphate Delta-isomerase, at 1,175,445 to 1,176,627 16203 mRNA_7836: 16204 - K02992 RP-S7, MRPS7, rpsG small subunit ribosomal protein S7, at 1,176,848 to 1,177,701 16204
Group Condition mRNA_7832 mRNA_7833 mRNA_7834 mRNA_7835 mRNA_7836
16200 16201 16202 16203 16204
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -2.4 -0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.8 -0.3 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.6 -0.4 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.7 +0.0 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.0 -0.6 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.5 -0.1 N.D. N.D.
growth on ypd YPD N.D. +0.1 -0.4 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy N.D. -0.0 -0.1 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.2 +0.1 N.D. N.D.
growth on oleic acid YNB Oleic Acid N.D. +0.2 +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +1.0 -0.4 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine N.D. +0.4 +0.3 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine N.D. +0.6 +0.2 N.D. N.D.
auxotrophy YNB Glucose N.D. +0.8 +0.1 N.D. N.D.
auxotrophy Dropout Complete N.D. +0.8 +0.1 N.D. N.D.
growth on ricinoleic acid YNB Glucose N.D. +1.2 -0.0 N.D. N.D.
growth on oleic acid YNB Glucose N.D. +0.8 +0.4 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy N.D. +1.4 +0.2 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +2.2 -0.2 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate N.D. +2.3 -0.0 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +2.4 +0.0 N.D. N.D.
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