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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16203 and 16204 are separated by 220 nucleotides
16204 and 16205 are separated by 817 nucleotides
16205 and 16206 are separated by 307 nucleotides
16206 and 16207 are separated by 375 nucleotides
mRNA_7835: 16203 - K01823 idi, IDI isopentenyl-diphosphate Delta-isomerase, at 1,175,445 to 1,176,627
16203
mRNA_7836: 16204 - K02992 RP-S7, MRPS7, rpsG small subunit ribosomal protein S7, at 1,176,848 to 1,177,701
16204
mRNA_7837: 16205 - Hypothetical Protein, at 1,178,519 to 1,178,828
16205
mRNA_7838: 16206 - K01011 TST, MPST, sseA thiosulfate/3-mercaptopyruvate sulfurtransferase, at 1,179,136 to 1,180,563
16206
mRNA_7839: 16207 - Hypothetical Protein, at 1,180,939 to 1,182,264
16207
Group
Condition
mRNA
_7835
mRNA
_7836
mRNA
_7837
mRNA
_7838
mRNA
_7839
16203
16204
16205
16206
16207
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.2
-0.0
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.5
+0.3
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