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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16207 and 16208 are separated by 526 nucleotides
16208 and 16209 are separated by 571 nucleotides
16209 and 16210 are separated by 394 nucleotides
16210 and 16211 are separated by 258 nucleotides
mRNA_7839: 16207 - Hypothetical Protein, at 1,180,939 to 1,182,264
16207
mRNA_7840: 16208 - K00620 argJ glutamate N-acetyltransferase / amino-acid N-acetyltransferase, at 1,182,791 to 1,184,398
16208
mRNA_7841: 16209 - K04728 ATM, TEL1 ataxia telangiectasia mutated family protein, at 1,184,970 to 1,194,668
16209
mRNA_7842: 16210 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403, at 1,195,063 to 1,195,629
16210
mRNA_7843: 16211 - BLAST alpha- -glucan [Moniliophthora roreri MCA 2997], at 1,195,888 to 1,196,592
16211
Group
Condition
mRNA
_7839
mRNA
_7840
mRNA
_7841
mRNA
_7842
mRNA
_7843
16207
16208
16209
16210
16211
growth on oleic acid
YNB Glucose
+0.2
-4.1
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-3.6
-0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-3.9
-0.1
+0.9
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-3.4
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose
+0.3
-3.1
-0.2
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-2.4
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.7
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-1.9
-0.3
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.2
-0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.7
-0.4
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-1.4
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-1.1
-0.3
+0.3
N.D.
growth on ypd
YPD
-0.2
-0.2
-0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.7
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.1
+0.4
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
-0.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.7
-0.2
+0.3
N.D.
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