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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16218 and 16219 are separated by 4150 nucleotides
16219 and 16220 are separated by 2808 nucleotides
16220 and 16221 are separated by 303 nucleotides
16221 and 16222 are separated by 486 nucleotides
mRNA_7850: 16218 - KOG3291 Ribosomal protein S7, at 1,218,272 to 1,218,817
16218
mRNA_7851: 16219 - KOG0142 Isopentenyl pyrophosphate-dimethylallyl pyrophosphate isomerase, at 1,222,968 to 1,223,602
16219
mRNA_7852: 16220 - Hypothetical Protein, at 1,226,411 to 1,226,632
16220
mRNA_7853: 16221 - Hypothetical Protein, at 1,226,936 to 1,227,400
16221
mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1,227,887 to 1,228,457
16222
Group
Condition
mRNA
_7850
mRNA
_7851
mRNA
_7852
mRNA
_7853
mRNA
_7854
16218
16219
16220
16221
16222
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-4.1
-0.1
-1.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-3.2
-0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.1
-0.9
+0.1
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.5
-0.1
-1.9
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-1.2
-0.2
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
-0.8
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
-1.4
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
-0.2
-0.1
-0.8
auxotrophy
YNB Glucose
N.D.
-0.8
-1.0
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.4
-1.5
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.1
-0.4
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.7
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.4
-0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.7
+0.4
-0.7
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.4
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.3
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.4
-0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+1.5
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.5
+0.4
-0.2
growth on ypd
YPD
N.D.
+0.2
+0.9
-0.0
-0.1
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