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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16221 and 16222 are separated by 486 nucleotides
16222 and 16223 are separated by 397 nucleotides
16223 and 16224 are separated by 94 nucleotides
16224 and 16225 are separated by 699 nucleotides
mRNA_7853: 16221 - Hypothetical Protein, at 1,226,936 to 1,227,400
16221
mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1,227,887 to 1,228,457
16222
mRNA_7855: 16223 - K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82, at 1,228,855 to 1,230,795
16223
mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1,230,890 to 1,231,576
16224
mRNA_7857: 16225 - K00211 TYR1 prephenate dehydrogenase (NADP+), at 1,232,276 to 1,233,897
16225
Group
Condition
mRNA
_7853
mRNA
_7854
mRNA
_7855
mRNA
_7856
mRNA
_7857
16221
16222
16223
16224
16225
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.7
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.9
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.4
-1.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.6
-1.1
N.D.
N.D.
growth on ypd
YPD
-0.0
-0.1
-1.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.3
-1.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.7
-1.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.8
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
-1.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-1.8
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.9
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.4
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
+0.1
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.5
+0.9
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.8
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+1.4
N.D.
N.D.
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