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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16222 and 16223 are separated by 397 nucleotides
16223 and 16224 are separated by 94 nucleotides
16224 and 16225 are separated by 699 nucleotides
16225 and 16226 are separated by 2090 nucleotides
mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1,227,887 to 1,228,457
16222
mRNA_7855: 16223 - K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82, at 1,228,855 to 1,230,795
16223
mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1,230,890 to 1,231,576
16224
mRNA_7857: 16225 - K00211 TYR1 prephenate dehydrogenase (NADP+), at 1,232,276 to 1,233,897
16225
mRNA_7858: 16226 - K11673 ACTR8, ARP8, INO80N actin-related protein 8, at 1,235,988 to 1,238,958
16226
Group
Condition
mRNA
_7854
mRNA
_7855
mRNA
_7856
mRNA
_7857
mRNA
_7858
16222
16223
16224
16225
16226
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.7
N.D.
N.D.
-3.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-1.0
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-1.0
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-1.7
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-1.1
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
-0.5
N.D.
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.4
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-1.8
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.2
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.6
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
N.D.
-0.8
auxotrophy
Dropout Complete
+0.1
-0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.4
-1.5
N.D.
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.9
N.D.
N.D.
-0.5
growth on ypd
YPD
-0.1
-1.5
N.D.
N.D.
+2.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+1.4
N.D.
N.D.
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
N.D.
N.D.
+0.7
growth on oleic acid
YNB Glucose
-0.4
+0.1
N.D.
N.D.
+1.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.8
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.6
N.D.
N.D.
+1.0
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