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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16224 and 16225 are separated by 699 nucleotides
16225 and 16226 are separated by 2090 nucleotides
16226 and 16227 are separated by 202 nucleotides
16227 and 16228 are separated by 442 nucleotides
mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1,230,890 to 1,231,576
16224
mRNA_7857: 16225 - K00211 TYR1 prephenate dehydrogenase (NADP+), at 1,232,276 to 1,233,897
16225
mRNA_7858: 16226 - K11673 ACTR8, ARP8, INO80N actin-related protein 8, at 1,235,988 to 1,238,958
16226
mRNA_7859: 16227 - Hypothetical Protein, at 1,239,161 to 1,241,466
16227
mRNA_7860: 16228 - HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331, at 1,241,909 to 1,243,568
16228
Group
Condition
mRNA
_7856
mRNA
_7857
mRNA
_7858
mRNA
_7859
mRNA
_7860
16224
16225
16226
16227
16228
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-3.1
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.8
-0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.9
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.5
-0.4
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
-0.5
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
-0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.8
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.0
-0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.7
-0.0
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
+1.2
-0.2
+0.0
growth on ypd
YPD
N.D.
N.D.
+2.0
+0.2
-0.2
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