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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16227 and 16228 are separated by 442 nucleotides
16228 and 16229 are separated by 320 nucleotides
16229 and 16230 are separated by 356 nucleotides
16230 and 16231 are separated by 113 nucleotides
mRNA_7859: 16227 - Hypothetical Protein, at 1,239,161 to 1,241,466
16227
mRNA_7860: 16228 - HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331, at 1,241,909 to 1,243,568
16228
mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1,243,889 to 1,246,571
16229
mRNA_7862: 16230 - Hypothetical Protein, at 1,246,928 to 1,249,617
16230
mRNA_7863: 16231 - K11407 HDAC6 histone deacetylase 6, at 1,249,731 to 1,253,390
16231
Group
Condition
mRNA
_7859
mRNA
_7860
mRNA
_7861
mRNA
_7862
mRNA
_7863
16227
16228
16229
16230
16231
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.0
+0.0
-0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.2
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.6
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
-0.5
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.0
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.0
+0.2
N.D.
growth on ypd
YPD
+0.2
-0.2
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
+0.1
+0.3
N.D.
auxotrophy
Dropout Complete
-0.4
+0.4
-0.1
+0.5
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.0
-0.0
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose
-0.4
+0.2
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
+0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
+0.5
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.0
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.3
+0.4
+0.7
N.D.
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