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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16231 and 16232 are separated by 4860 nucleotides
16232 and 16233 are separated by 209 nucleotides
16233 and 16234 are separated by 483 nucleotides
16234 and 16235 are separated by 528 nucleotides
mRNA_7863: 16231 - K11407 HDAC6 histone deacetylase 6, at 1,249,731 to 1,253,390
16231
mRNA_7864: 16232 - PRINTS-Proline rich extensin signature-PR01217, at 1,258,251 to 1,258,922
16232
mRNA_7865: 16233 - Hypothetical Protein, at 1,259,132 to 1,259,731
16233
mRNA_7866: 16234 - Hypothetical Protein, at 1,260,215 to 1,261,528
16234
mRNA_7867: 16235 - Hypothetical Protein, at 1,262,057 to 1,262,662
16235
Group
Condition
mRNA
_7863
mRNA
_7864
mRNA
_7865
mRNA
_7866
mRNA
_7867
16231
16232
16233
16234
16235
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-1.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-1.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.9
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.3
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.3
-0.2
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.6
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.7
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+1.0
-0.2
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