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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16240 and 16241 are separated by 163 nucleotides
16241 and 16242 are separated by 147 nucleotides
16242 and 16243 are separated by 438 nucleotides
16243 and 16244 are separated by 123 nucleotides
mRNA_7872: 16240 - K11411 SIRT1, SIR2L1 NAD-dependent deacetylase sirtuin 1, at 1,269,870 to 1,272,263
16240
mRNA_7873: 16241 - K10258 TER, TSC13, CER10 very-long-chain enoyl-CoA reductase, at 1,272,427 to 1,274,098
16241
mRNA_7874: 16242 - K02202 CDK7 cyclin-dependent kinase 7, at 1,274,246 to 1,275,705
16242
mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,276,144 to 1,278,283
16243
mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,278,407 to 1,280,463
16244
Group
Condition
mRNA
_7872
mRNA
_7873
mRNA
_7874
mRNA
_7875
mRNA
_7876
16240
16241
16242
16243
16244
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.3
+0.1
-1.4
growth on ypd
YPD
-0.1
N.D.
-0.6
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
+0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.4
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.1
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.6
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
-0.4
-0.2
+0.6
auxotrophy
Dropout Complete
+0.3
N.D.
-0.4
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.5
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
N.D.
-0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.4
-0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
-0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.5
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.9
+0.1
+0.1
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