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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16241 and 16242 are separated by 147 nucleotides
16242 and 16243 are separated by 438 nucleotides
16243 and 16244 are separated by 123 nucleotides
16244 and 16245 are separated by 308 nucleotides
mRNA_7873: 16241 - K10258 TER, TSC13, CER10 very-long-chain enoyl-CoA reductase, at 1,272,427 to 1,274,098
16241
mRNA_7874: 16242 - K02202 CDK7 cyclin-dependent kinase 7, at 1,274,246 to 1,275,705
16242
mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,276,144 to 1,278,283
16243
mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,278,407 to 1,280,463
16244
mRNA_7877: 16245 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1,280,772 to 1,282,226
16245
Group
Condition
mRNA
_7873
mRNA
_7874
mRNA
_7875
mRNA
_7876
mRNA
_7877
16241
16242
16243
16244
16245
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.3
+0.1
-1.4
-1.1
growth on ypd
YPD
N.D.
-0.6
-0.2
-0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.2
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
-0.4
-0.2
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.0
+0.5
+0.1
auxotrophy
Dropout Complete
N.D.
-0.4
-0.2
+0.6
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
-0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.0
+0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.2
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
-0.2
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.9
+0.1
+0.1
-0.1
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