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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16243 and 16244 are separated by 123 nucleotides
16244 and 16245 are separated by 308 nucleotides
16245 and 16246 are separated by 221 nucleotides
16246 and 16247 are separated by 5 nucleotides
mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,276,144 to 1,278,283
16243
mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,278,407 to 1,280,463
16244
mRNA_7877: 16245 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1,280,772 to 1,282,226
16245
mRNA_7878: 16246 - K14400 PCF11 pre-mRNA cleavage complex 2 protein Pcf11, at 1,282,448 to 1,285,814
16246
mRNA_7879: 16247 - Hypothetical Protein, at 1,285,820 to 1,286,086
16247
Group
Condition
mRNA
_7875
mRNA
_7876
mRNA
_7877
mRNA
_7878
mRNA
_7879
16243
16244
16245
16246
16247
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.4
-1.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.2
-0.3
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.6
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.6
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.5
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.5
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.6
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.2
N.D.
N.D.
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