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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16247 and 16248 are separated by 116 nucleotides
16248 and 16249 are separated by 783 nucleotides
16249 and 16250 are separated by 1432 nucleotides
16250 and 16251 are separated by 661 nucleotides
mRNA_7879: 16247 - Hypothetical Protein, at 1,285,820 to 1,286,086
16247
mRNA_7880: 16248 - K02940 RP-L9e, RPL9 large subunit ribosomal protein L9e, at 1,286,203 to 1,287,208
16248
mRNA_7881: 16249 - Hypothetical Protein, at 1,287,992 to 1,288,558
16249
mRNA_7882: 16250 - HMMPfam-Protein of unknown function (DUF4243)-PF14027, at 1,289,991 to 1,293,240
16250
mRNA_7883: 16251 - Hypothetical Protein, at 1,293,902 to 1,295,426
16251
Group
Condition
mRNA
_7879
mRNA
_7880
mRNA
_7881
mRNA
_7882
mRNA
_7883
16247
16248
16249
16250
16251
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.5
-0.1
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.0
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.6
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.6
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.7
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.5
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.7
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.9
+0.2
+0.2
growth on ypd
YPD
N.D.
N.D.
+1.4
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.8
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+1.6
+0.1
+0.1
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