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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16249 and 16250 are separated by 1432 nucleotides
16250 and 16251 are separated by 661 nucleotides
16251 and 16252 are separated by 1424 nucleotides
16252 and 16253 are separated by 402 nucleotides
mRNA_7881: 16249 - Hypothetical Protein, at 1,287,992 to 1,288,558
16249
mRNA_7882: 16250 - HMMPfam-Protein of unknown function (DUF4243)-PF14027, at 1,289,991 to 1,293,240
16250
mRNA_7883: 16251 - Hypothetical Protein, at 1,293,902 to 1,295,426
16251
mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1,296,851 to 1,297,993
16252
mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627
16253
Group
Condition
mRNA
_7881
mRNA
_7882
mRNA
_7883
mRNA
_7884
mRNA
_7885
16249
16250
16251
16252
16253
auxotrophy
Dropout Complete
-0.2
-0.0
-0.0
-0.8
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
-0.0
+0.2
-0.8
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.1
-0.5
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.3
-0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.6
+0.3
-0.8
-0.2
auxotrophy
YNB Glucose
-0.2
+0.1
-0.1
-0.7
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
+0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.1
-0.6
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.0
-0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.1
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.0
+0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.1
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.7
+0.1
-0.1
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
-0.0
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.2
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+0.3
+0.3
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.2
+0.2
+0.1
-0.1
growth on ypd
YPD
+1.4
-0.3
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.0
+0.2
+1.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.6
+0.1
+0.1
+0.1
+0.0
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