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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16251 and 16252 are separated by 1424 nucleotides
16252 and 16253 are separated by 402 nucleotides
16253 and 16254 are separated by 228 nucleotides
16254 and 16255 are separated by 681 nucleotides
mRNA_7883: 16251 - Hypothetical Protein, at 1,293,902 to 1,295,426
16251
mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1,296,851 to 1,297,993
16252
mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627
16253
mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1,300,856 to 1,302,140
16254
mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1,302,822 to 1,306,124
16255
Group
Condition
mRNA
_7883
mRNA
_7884
mRNA
_7885
mRNA
_7886
mRNA
_7887
16251
16252
16253
16254
16255
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.6
-0.1
-0.1
-0.2
auxotrophy
Dropout Complete
-0.0
-0.8
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose
-0.1
-0.7
-0.2
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.8
-0.3
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.3
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
-0.0
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
-0.4
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.8
-0.2
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.2
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.3
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
+0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
-0.3
+0.3
+0.2
growth on ypd
YPD
+0.1
+0.3
+0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+1.0
-0.0
+0.1
+0.3
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