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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16252 and 16253 are separated by 402 nucleotides
16253 and 16254 are separated by 228 nucleotides
16254 and 16255 are separated by 681 nucleotides
16255 and 16256 are separated by 206 nucleotides
mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1,296,851 to 1,297,993
16252
mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627
16253
mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1,300,856 to 1,302,140
16254
mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1,302,822 to 1,306,124
16255
mRNA_7888: 16256 - K12274 SEC72 translocation protein SEC72, at 1,306,331 to 1,307,074
16256
Group
Condition
mRNA
_7884
mRNA
_7885
mRNA
_7886
mRNA
_7887
mRNA
_7888
16252
16253
16254
16255
16256
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
-0.3
-0.0
+0.1
N.D.
auxotrophy
Dropout Complete
-0.8
-0.2
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose
-0.7
-0.2
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.2
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.3
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.4
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
+0.0
+0.4
N.D.
growth on ypd
YPD
+0.3
+0.1
-0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-0.0
+0.1
+0.3
N.D.
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