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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16253 and 16254 are separated by 228 nucleotides
16254 and 16255 are separated by 681 nucleotides
16255 and 16256 are separated by 206 nucleotides
16256 and 16257 are separated by 467 nucleotides
mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627
16253
mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1,300,856 to 1,302,140
16254
mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1,302,822 to 1,306,124
16255
mRNA_7888: 16256 - K12274 SEC72 translocation protein SEC72, at 1,306,331 to 1,307,074
16256
mRNA_7889: 16257 - Hypothetical Protein, at 1,307,542 to 1,308,171
16257
Group
Condition
mRNA
_7885
mRNA
_7886
mRNA
_7887
mRNA
_7888
mRNA
_7889
16253
16254
16255
16256
16257
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
+0.2
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
+0.4
N.D.
N.D.
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