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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16258 and 16259 are separated by 259 nucleotides
16259 and 16260 are separated by 380 nucleotides
16260 and 16261 are separated by 970 nucleotides
16261 and 16262 are separated by 278 nucleotides
mRNA_7890: 16258 - K19564 CTR, HNM1 choline transport protein, at 1,308,906 to 1,311,166
16258
mRNA_7891: 16259 - Hypothetical Protein, at 1,311,426 to 1,311,848
16259
mRNA_7892: 16260 - K08496 GOSR2, BOS1 golgi SNAP receptor complex member 2, at 1,312,229 to 1,313,208
16260
mRNA_7893: 16261 - KOG0928 Pattern-formation protein/guanine nucleotide exchange factor, at 1,314,179 to 1,318,508
16261
mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1,318,787 to 1,321,877
16262
Group
Condition
mRNA
_7890
mRNA
_7891
mRNA
_7892
mRNA
_7893
mRNA
_7894
16258
16259
16260
16261
16262
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
N.D.
-0.2
-0.1
auxotrophy
Dropout Complete
-0.0
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.5
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
N.D.
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
N.D.
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.3
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose
+0.2
+0.3
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.5
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.8
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.8
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+1.6
N.D.
-0.2
+0.1
growth on ypd
YPD
+0.0
+1.6
N.D.
+0.1
+0.1
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