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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16259 and 16260 are separated by 380 nucleotides
16260 and 16261 are separated by 970 nucleotides
16261 and 16262 are separated by 278 nucleotides
16262 and 16263 are separated by 1155 nucleotides
mRNA_7891: 16259 - Hypothetical Protein, at 1,311,426 to 1,311,848
16259
mRNA_7892: 16260 - K08496 GOSR2, BOS1 golgi SNAP receptor complex member 2, at 1,312,229 to 1,313,208
16260
mRNA_7893: 16261 - KOG0928 Pattern-formation protein/guanine nucleotide exchange factor, at 1,314,179 to 1,318,508
16261
mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1,318,787 to 1,321,877
16262
mRNA_7895: 16263 - KOG0027 Calmodulin and related proteins (EF-Hand superfamily), at 1,323,033 to 1,324,122
16263
Group
Condition
mRNA
_7891
mRNA
_7892
mRNA
_7893
mRNA
_7894
mRNA
_7895
16259
16260
16261
16262
16263
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.3
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.4
+0.2
N.D.
auxotrophy
YNB Glucose
+0.3
N.D.
-0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.7
N.D.
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
-0.0
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
N.D.
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.8
N.D.
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.6
N.D.
-0.2
+0.1
N.D.
growth on ypd
YPD
+1.6
N.D.
+0.1
+0.1
N.D.
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