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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16262 and 16263 are separated by 1155 nucleotides
16263 and 16264 are separated by 158 nucleotides
16264 and 16265 are separated by 351 nucleotides
16265 and 16266 are separated by 218 nucleotides
mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1,318,787 to 1,321,877
16262
mRNA_7895: 16263 - KOG0027 Calmodulin and related proteins (EF-Hand superfamily), at 1,323,033 to 1,324,122
16263
mRNA_7896: 16264 - K01783 rpe, RPE ribulose-phosphate 3-epimerase, at 1,324,281 to 1,325,324
16264
mRNA_7897: 16265 - K10872 DMC1 meiotic recombination protein DMC1, at 1,325,676 to 1,327,786
16265
mRNA_7898: 16266 - K12660 rhmA 2-dehydro-3-deoxy-L-rhamnonate aldolase, at 1,328,005 to 1,329,095
16266
Group
Condition
mRNA
_7894
mRNA
_7895
mRNA
_7896
mRNA
_7897
mRNA
_7898
16262
16263
16264
16265
16266
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
N.D.
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
N.D.
+0.1
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
-0.2
-0.7
growth on ypd
YPD
+0.1
N.D.
N.D.
-0.1
-0.5
auxotrophy
Dropout Complete
-0.0
N.D.
N.D.
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
N.D.
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
N.D.
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose
+0.1
N.D.
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
N.D.
+0.1
+0.5
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