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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16266 and 16267 are separated by 269 nucleotides
16267 and 16268 are separated by 486 nucleotides
16268 and 16269 are separated by 1271 nucleotides
16269 and 16270 are separated by 2352 nucleotides
mRNA_7898: 16266 - K12660 rhmA 2-dehydro-3-deoxy-L-rhamnonate aldolase, at 1,328,005 to 1,329,095
16266
mRNA_7899: 16267 - K00618 E2.3.1.1 amino-acid N-acetyltransferase, at 1,329,365 to 1,331,583
16267
mRNA_7900: 16268 - Hypothetical Protein, at 1,332,070 to 1,333,846
16268
mRNA_7901: 16269 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 1,335,118 to 1,336,063
16269
mRNA_7902: 16270 - K13348 MPV17 protein Mpv17, at 1,338,416 to 1,339,607
16270
Group
Condition
mRNA
_7898
mRNA
_7899
mRNA
_7900
mRNA
_7901
mRNA
_7902
16266
16267
16268
16269
16270
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-1.7
+0.1
+0.6
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.8
-0.0
-0.2
+0.6
growth on oleic acid
YNB Oleic Acid
-0.3
-1.8
+0.4
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-2.1
+0.9
-0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.7
+0.3
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-1.1
+0.1
+0.9
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-1.9
+0.5
+0.8
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
-1.1
-0.1
+1.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-1.5
+0.7
+0.7
+0.1
growth on ypd
YPD
-0.5
-0.1
+0.5
-0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.2
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.0
-2.1
+0.2
+1.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-1.6
+0.5
+0.9
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.4
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.5
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.0
+0.4
+0.0
auxotrophy
YNB Glucose
+0.1
-2.1
+1.3
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-2.1
+0.3
+1.2
+0.4
auxotrophy
Dropout Complete
-0.6
-0.3
+0.8
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
+0.4
+1.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
+1.3
-0.2
+0.3
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