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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16268 and 16269 are separated by 1271 nucleotides
16269 and 16270 are separated by 2352 nucleotides
16270 and 16271 are separated by 211 nucleotides
16271 and 16272 are separated by 511 nucleotides
mRNA_7900: 16268 - Hypothetical Protein, at 1,332,070 to 1,333,846
16268
mRNA_7901: 16269 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 1,335,118 to 1,336,063
16269
mRNA_7902: 16270 - K13348 MPV17 protein Mpv17, at 1,338,416 to 1,339,607
16270
mRNA_7903: 16271 - K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9, at 1,339,819 to 1,342,318
16271
mRNA_7904: 16272 - Hypothetical Protein, at 1,342,830 to 1,343,789
16272
Group
Condition
mRNA
_7900
mRNA
_7901
mRNA
_7902
mRNA
_7903
mRNA
_7904
16268
16269
16270
16271
16272
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.1
N.D.
+0.2
growth on ypd
YPD
+0.5
-0.0
-0.5
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
+0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.6
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
+0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.9
-0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+1.2
-0.3
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
+0.1
N.D.
+0.3
auxotrophy
Dropout Complete
+0.8
+0.2
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.9
-0.3
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+1.1
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.8
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.7
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.3
-0.2
+0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.9
+0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.2
+1.3
-0.0
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+1.2
+0.4
N.D.
+0.3
auxotrophy
YNB Glucose
+1.3
+0.3
+0.5
N.D.
+0.3
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