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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16271 and 16272 are separated by 511 nucleotides
16272 and 16273 are separated by 416 nucleotides
16273 and 16274 are separated by 797 nucleotides
16274 and 16275 are separated by 127 nucleotides
mRNA_7903: 16271 - K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9, at 1,339,819 to 1,342,318
16271
mRNA_7904: 16272 - Hypothetical Protein, at 1,342,830 to 1,343,789
16272
mRNA_7905: 16273 - K00147 proA glutamate-5-semialdehyde dehydrogenase, at 1,344,206 to 1,345,846
16273
mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770
16274
mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1,348,898 to 1,356,379
16275
Group
Condition
mRNA
_7903
mRNA
_7904
mRNA
_7905
mRNA
_7906
mRNA
_7907
16271
16272
16273
16274
16275
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-1.7
+0.3
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-1.6
+0.2
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-1.7
+0.3
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-1.0
+0.2
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-1.3
-0.1
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.8
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.8
+0.4
-0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.4
-0.4
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
-0.8
+0.3
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.8
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.6
+0.6
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.2
+0.3
-1.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.9
+0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.7
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.1
+0.2
-0.5
growth on ypd
YPD
N.D.
-0.3
+0.4
-0.1
-0.0
auxotrophy
Dropout Complete
N.D.
-0.1
+0.5
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.0
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.4
-0.3
+0.0
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