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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16272 and 16273 are separated by 416 nucleotides
16273 and 16274 are separated by 797 nucleotides
16274 and 16275 are separated by 127 nucleotides
16275 and 16276 are separated by 641 nucleotides
mRNA_7904: 16272 - Hypothetical Protein, at 1,342,830 to 1,343,789
16272
mRNA_7905: 16273 - K00147 proA glutamate-5-semialdehyde dehydrogenase, at 1,344,206 to 1,345,846
16273
mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770
16274
mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1,348,898 to 1,356,379
16275
mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1,357,021 to 1,359,036
16276
Group
Condition
mRNA
_7904
mRNA
_7905
mRNA
_7906
mRNA
_7907
mRNA
_7908
16272
16273
16274
16275
16276
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-1.7
+0.3
-0.9
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-1.6
+0.2
-1.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-1.3
-0.1
-0.8
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-1.7
+0.3
-0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.0
+0.2
-1.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.8
-0.1
-0.6
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
+0.4
-0.7
-0.4
auxotrophy
YNB Glucose
+0.3
-0.8
+0.3
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.8
+0.4
-0.8
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.9
+0.1
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
+0.2
-0.5
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
-0.4
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.4
-0.7
+0.2
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.3
-1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.6
+0.6
-0.8
+0.1
auxotrophy
Dropout Complete
-0.1
+0.5
+0.3
-0.6
-0.1
growth on ypd
YPD
-0.3
+0.4
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.4
-0.3
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
+0.3
-0.1
+0.1
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