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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16274 and 16275 are separated by 127 nucleotides
16275 and 16276 are separated by 641 nucleotides
16276 and 16277 are separated by 135 nucleotides
16277 and 16278 are separated by 117 nucleotides
mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770
16274
mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1,348,898 to 1,356,379
16275
mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1,357,021 to 1,359,036
16276
mRNA_7909: 16277 - Hypothetical Protein, at 1,359,172 to 1,360,020
16277
mRNA_7910: 16278 - KOG3767 Sideroflexin, at 1,360,138 to 1,362,160
16278
Group
Condition
mRNA
_7906
mRNA
_7907
mRNA
_7908
mRNA
_7909
mRNA
_7910
16274
16275
16276
16277
16278
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.9
-0.3
-0.5
-1.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.8
-0.3
-0.4
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.5
-0.6
-0.6
-0.9
auxotrophy
YNB Glucose
+0.3
-0.7
-0.3
-0.2
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.6
-0.5
-0.7
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.7
-0.4
-0.4
-1.2
growth on oleic acid
YNB Glucose
+0.2
-0.5
-0.2
-0.3
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.1
-0.1
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.8
+0.1
-0.6
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-1.0
-0.1
-0.5
-0.2
auxotrophy
Dropout Complete
+0.3
-0.6
-0.1
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.8
-0.2
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-1.0
-0.0
+0.2
-0.6
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.7
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.2
+0.0
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.1
-0.1
-0.0
growth on ypd
YPD
-0.1
-0.0
+0.0
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.1
-0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.3
-0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
+0.0
-0.0
-0.1
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