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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16281 and 16282 are separated by 1224 nucleotides
16282 and 16283 are separated by 1881 nucleotides
16283 and 16284 are separated by 383 nucleotides
16284 and 16285 are separated by 374 nucleotides
mRNA_7913: 16281 - K00234 SDHA, SDH1 succinate dehydrogenase (ubiquinone) flavoprotein subunit, at 4,859 to 7,568
16281
mRNA_7914: 16282 - K10684 UBLE1A, SAE1 ubiquitin-like 1-activating enzyme E1 A, at 8,793 to 10,247
16282
mRNA_7915: 16283 - SUPERFAMILY--SSF51445, at 12,129 to 14,300
16283
mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14,684 to 15,975
16284
mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077
16285
Group
Condition
mRNA
_7913
mRNA
_7914
mRNA
_7915
mRNA
_7916
mRNA
_7917
16281
16282
16283
16284
16285
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.8
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.8
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
+0.8
-2.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-1.0
+0.2
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.8
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.3
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.9
+0.6
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.5
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.5
+0.3
+0.2
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