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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16283 and 16284 are separated by 383 nucleotides
16284 and 16285 are separated by 374 nucleotides
16285 and 16286 are separated by 194 nucleotides
16286 and 16287 are separated by 3116 nucleotides
mRNA_7915: 16283 - SUPERFAMILY--SSF51445, at 12,129 to 14,300
16283
mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14,684 to 15,975
16284
mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077
16285
mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18,272 to 19,315
16286
mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22,432 to 23,509
16287
Group
Condition
mRNA
_7915
mRNA
_7916
mRNA
_7917
mRNA
_7918
mRNA
_7919
16283
16284
16285
16286
16287
auxotrophy
YNB Glucose
-0.2
-0.8
-0.3
-0.3
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.4
-0.2
-1.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.6
+0.2
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
+0.1
-0.2
-0.6
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
-0.3
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.8
-2.4
-0.1
+0.4
growth on ypd
YPD
+0.1
-0.8
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.8
-0.6
+0.0
+0.8
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
-0.2
+0.5
-0.4
auxotrophy
Dropout Complete
+0.1
-0.3
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.0
+0.2
+0.5
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.3
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.4
+0.3
+0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.1
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
-0.3
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
-0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
-0.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
+0.6
+0.2
+0.3
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.6
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.3
+0.6
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
+0.2
+0.5
-0.3
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